Nextflow workflow report

[pedantic_darwin]

Run times

06-Feb-2026 16:36:47 - 06-Feb-2026 18:29:51 (duration: 1h 53m 4s)

  424 succeeded  

  0 cached  

  0 ignored  

  1 failed  

Nextflow command

nextflow run break-through-cancer/btc-spatial-pipelines -profile igs --input samplesheet.csv --outdir outs-subclass --ref_scrna_type_col Subclass --deconvolve.n_top_genes 99999 --analyze.xsample -w /usr/local/scratch/dlvovs/work --ref_scrna /local/projects-t3/fertig_staple/staple-paper/data/Human_HMBA_basalganglia_AIT_pre-print_NAC.h5ad

CPU-Hours

328.3 (0% failed)

Launch directory

/autofs/projects-t3/fertig_staple/staple-paper

Work directory

/usr/local/scratch/dlvovs/work

Project directory

/home/dlvovs/.nextflow/assets/break-through-cancer/btc-spatial-pipelines

Script name

main.nf

Script ID

5a95f7d52dc1cd094f2b1163a4ea12a7

Workflow session

37b4bcc0-53d8-48a5-8b26-d5b1e9dd8188

Workflow repository

https://github.com/break-through-cancer/btc-spatial-pipelines, revision main (commit hash fbf88bd923633b6b4c991a7b70b501f1908f1994)

Workflow profile

igs

Nextflow version

version 24.10.4, build 5934 (20-01-2025 16:47 UTC)