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Create a list of genes in regulons inferred by SCENIC

Source: R/import_fxns.R
create_regulon_list_scenic.Rd

Generates a list of transcription factors and the genes targeted by the transcription factor as part of their regulon inferred by pySCENIC

Usage

create_regulon_list_scenic(regulons)

Arguments

regulons

Data frame or file path to the table of the output of the ctx function from pySCENIC

Value

A list where names are transcription factors and the stored values are character vectors of genes in the inferred regulons

Examples

data(SCENIC)
regulon_list_tiny <- create_regulon_list_scenic(regulons = SCENIC$regulons_tiny)