Access all features, receptors, or ligands present in a signaling network.

This function collates all of the features, receptors, or ligands found in a signaling network anywhere in a list of clusters. This can be useful for comparing signaling networks across two separate conditions. In order to run this build_domino() must be run on the object previously.

Usage

dom_network_items(dom, clusters = NULL, return = NULL)

Arguments

dom

Domino object containing a signaling network (i.e. build_domino() was run)

clusters

Vector indicating clusters to collate network items from. If left as NULL then all clusters will be included.

return

String indicating where to collate "features", "receptors", or "ligands". If "all" then a list of all three will be returned.

Value

A vector containing all features, receptors, or ligands in the data set or a list containing all three.

Examples

monocyte_receptors <- dom_network_items(dominoSignal:::pbmc_dom_built_tiny, "CD14_monocyte", "receptors")
all_tfs <- dom_network_items(dominoSignal:::pbmc_dom_built_tiny, return = "features")