Plot differential linkages among domino results ranked by a comparative statistic

Usage

plot_differential_linkages(
  differential_linkages,
  test_statistic,
  stat_range = c(0, 1),
  stat_ranking = c("ascending", "descending"),
  group_palette = NULL
)

Arguments

differential_linkages: a data frame output from the test_differential_linkages() function
test_statistic: column name of differential_linkages where the test statistic used for ranking linkages is stored (ex. 'p.value')
stat_range: a two value vector of the minimum and maximum values of test_statistic for plotting linkage features
stat_ranking: 'ascending' (lowest value of test statisic is colored red and plotted at the top) or 'descending' (highest value of test statistic is colored red and plotted at the top).
group_palette: a named vector of colors to use for each group being compared

Value

A heatmap-class object of features ranked by test_statistic annotated with the proportion of subjects that showed active linkage of the features.

Examples

example(build_domino, echo = FALSE)
example(test_differential_linkages, echo = FALSE)
plot_differential_linkages(
 differential_linkages = tiny_differential_linkage_c1,
 test_statistic = "p.value",
 stat_ranking = "ascending"
)